Download e-book for iPad: Anatomy Ontologies for Bioinformatics: Principles and by Albert Burger, Duncan Davidson, Richard Baldock

By Albert Burger, Duncan Davidson, Richard Baldock

ISBN-10: 1846288843

ISBN-13: 9781846288845

This publication presents a well timed and first-of-its-kind selection of papers on anatomy ontologies. it's interdisciplinary in its process, bringing jointly the appropriate services from computing and biomedical experiences. The publication goals to supply readers with a finished realizing of the rules of anatomical ontologies and the-state-of-the-art when it comes to present instruments and purposes. It additionally highlights demanding situations that stay this day.

Show description

Read Online or Download Anatomy Ontologies for Bioinformatics: Principles and Practice (Computational Biology) PDF

Best bioinformatics books

Download e-book for iPad: Introduction to Genomics by Arthur M. Lesk

Our genome is the blueprint to our life: it encodes all of the details we have to strengthen from a unmarried mobilephone right into a highly advanced useful organism. yet how will we establish the genes that make up our genome? How can we confirm their functionality? and the way do assorted genes shape the regulatory networks that direct the techniques of existence?

Read e-book online Methods in Modern Biophysics PDF

Incorporating contemporary dramatic advances, this textbook provides a clean and well timed advent to fashionable biophysical equipment. An array of recent, quicker and higher-power biophysical tools now allows scientists to check the mysteries of lifestyles at a molecular point. This leading edge textual content surveys and explains the 10 key biophysical equipment, together with these with regards to biophysical nanotechnology, scanning probe microscopy, X-ray crystallography, ion mobility spectrometry, mass spectrometry, proteomics, and protein folding and constitution.

New PDF release: Bioinformatics and Data Analysis in Microbiology

The fast development of sequencing thoughts, coupled with the recent methodologies of bioinformatics to deal with large-scale facts research, are delivering interesting possibilities to appreciate microbial groups from numerous environments, past prior mind's eye. This ebook offers worthy, up to date, and specified details on quite a few points of bioinformatics facts research with functions to microbiology.

Extra info for Anatomy Ontologies for Bioinformatics: Principles and Practice (Computational Biology)

Sample text

Rhee. Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol, 135:1–11, 2004. 2 Plant Structure Ontology (PSO) 41 4. A. Burger, D. Davidson, and R. Baldock. Formalization of mouse embryo anatomy. Bioinformatics, 20:259–67, 2004. 5. I. Clark, C. Brooksbank, and J. Lomax. It’s all GO for plant scientists. Plant Physiol, 138:1268–1278, 2005. 6. D. J. Craigon, N. James, J. Okyere, J. Higgins, J. Jotham, and S. May. NASCArrays: a repository for microarray data generated by NASC’s transcriptomics service.

Stein, P. Stevens, L. Vincent, D. Ware, and F. Zapata. Plant Ontology (PO): A controlled vocabulary of plant structures and growth stages. Comp Funct Genom, 6:388–397, 2005. 15. P. Jaiswal, J. Ni, I. Yap, D. Ware, W. Spooner, K. Youens-Clark, L. Ren, C. Liang, W. Zhao, K. Ratnapu, B. Faga, P. Canaran, M. Fogleman, C. Hebbard, S. Avraham, S. Schmidt, T. M. S. Buckler, L. Stein, and S. McCouch. Gramene: a bird’s eye view of cereal genomes. Nucleic Acids Res, 34:D717–23, 2006. 16. J. Lawrence, Q. L.

Fruit fly [8], mouse [4, 11], zebrafish [24], and humans [12]. Anatomical vocabularies were developed for a few plant species too, such as Arabidopsis [3], maize [25] and cereals [26]. , Cereal Plant Anatomy Ontology). No attempts were made to map the existing plant ontologies to each other, conceivably due to apparent variation in nomenclature and different organizational principles on which these vocabularies were built. Following the GO paradigm and embracing the idea of a generic, standardized terminology that would ultimately encompass many flowering plants, and that would allow for comparison across species, the Plant Ontology Consortium (POC) developed the first controlled vocabulary of anatomy and morphology of flowering plants, the Plant Structure Ontology (PSO) [13].

Download PDF sample

Anatomy Ontologies for Bioinformatics: Principles and Practice (Computational Biology) by Albert Burger, Duncan Davidson, Richard Baldock

by Paul

Rated 4.11 of 5 – based on 28 votes